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2013

D. Adams, R. Baldock, S. Bhattacharya, A.J. Copp, M. Dickinson, N.D. Greene, R.M. Henkelman, M. Justice, T. Mohun, S.A. Murray, E. Pauws, M. Raess, J. Rossant, T. Weaver, D. West. Bloomsbury Report on Mouse Embryo Phenotyping: Recommendations from the IMPC Workshop on Embryonic Lethal Screening. Disease Models and Mechanisms 6(3):571-579, 2013.
DOI 10.1242/dmm.011833 PMID 23519032

G.A. Anderson, M.D. Wong, J. Yang, R.M. Henkelman. 3D Imaging, Registration, and Analysis of the Early Mouse Embryonic Vasculature. Developmental Dynamics 242(5):517-528, 2013.
DOI 10.1002/dvdy.23947 PMID 23417982

A.L. Conroy, K.L. Silver, K. Zhong, M.Y. Rennie, P. Ward, J.V. Sarma, M.E. Molyneux, J.G. Sled, J.F. Fletcher, S. Rogerson, K.C. Kain. Complement Activation and the Resulting Placental Vascular Insufficiency Drives Fetal Growth Restriction Associated with Placental Malaria. Cell Host and Microbe 13(2):215-226, 2013.
DOI 10.1016/jchom.2013.01.010 PMID 23414761

J. Ellegood, B.A. Babineau, R.M. Henkelman, J.P. Lerch, J.N. Crawley. Neuroanatomical Analysis of the BTBR Mouse Model of Autism using Magnetic Resonance Imaging and Diffusion Tensor Imaging. NeuroImage 70:288-301, 2013.
DOI 10.1016/j.neuroimage.2012.12.029 PMID 23275046

J.A. Gleave, J.P. Lerch, R.M. Henkelman, B.J. Nieman. A Method for 3D Immunostaining and Optical Imaging of the Mouse Brain Demonstrated in Neural Progenitor Cells. PLoS One 8(8):e72039, 2013.
DOI 10.1016/j.neuroimage.2012.12.029 PMID 23275046

F. Hébert, M. Grand'maison, M.K. Ho, J.P. Lerch, E. Hamel, B.J. Bedell. Cortical Atrophy and Hypoperfusion in a Transgenic Mouse Model of Alzheimer's Disease. Neurobiology of Aging 70:288-300, 2013.
DOI 10.1016/j.neurobiolaging.2012.11.022 PMID 23273599

L.B. Kelsey, A.M. Flenniken, D. Qu, A. Funnell, R. Pearson, Y. Zhou, I. Voronina, Z. Berberovic, G. Wood, S. Newbigging, E. Weiss, M. Wong, I. Quach, S. Yeh, A.R. Deshwar, I.C. Scott, C. McKerlie, R.M. Henkelman, P. Backx, J. Simpson, L. Osborne, J. Rossant, M. Crossley, B. Bruneau, S.L. Adamson. ENU-induced Mutation in the DNA-binding Domain of LKF3 Reveals Important Roles for KLF3 in Cardiovascular Development and Function in Mice. PLoS Genetics 9(7):e1003612.
DOI 10.1371/journal.pgen.1003612. PMID 23874215

L.A. Leigland, M.M. Ford, J.P. Lerch, C.D. Kroenke. The Influence of Fetal Ethanol Exposure on Subsequent Development of the Cerebral Cortex as Revealed by Magnetic Resonance Imaging. Alcoholism: Clinical and Experimental Research 37(6):924-932, 2013.
DOI 10.1111/acer.12051 PMID 23442156

L. Lindvere, R. Janik, A. Dorr, D. Chartash, B. Sahota, J.G. Sled, B. Stefanovic. Cerebral Microvascular Network Geometry Changes in Response to Functional Stimulation. NeuroImage 71(1):248-259, 2013 (Cover Illustration).
DOI 10.1016/j.neuroimage.2013.01.011 PMID 23353600.

D.K. Manning, M. Sergeev, R.G. van Heesbeen, M.D. Wong, J.H. Oh, R.M. Henkelman, I. Drummond, J.V. Shah, D.R. Beier. Loss of the Ciliary Kinase Nek8 Causes Left-Right Asymmetry Defects. Journal of the American Society of Nephrology 24(1):100-112, 2013.
DOI 10.1681/ASN.2012050490 PMID 23274954

L.K. Pacey, I.C. Xuan, S. Guan, D. Sussman, R.M. Henkelman, Y. Chen, C. Thomsen, D.R. Hampson. Delayed Myelination in a Mouse Model of Fragile X Syndrome. Human Molecular Genetics 22(19):3920-3930, 2013.
DOI 10.1093/hmg/ddt246 PMID 23740941

P. Parasoglou, C. A. Berrios-Otero, B. J. Nieman, D. H. Turnbull. High-resolution MRI of Early Stage Mouse Embryos. NMR in Biomedicine 26(2):224-231, 2013.
DOI 10.1002/nbm.2843 PMID 22915475

A.S. Sengar, J. Ellegood, A.P. Yiu, H. Wang, W. Wang, S.C. Juneja, J.P. Lerch, S.A. Josselyn, R.M. Henkelman, M.W. Salter, S.E. Egan. Vertebrate Intersectin1 is Repurposed to Facilitate Cortical Midline Connectivity and Higher Order Cognition. Journal of Neuroscience 33(9):4055-4065, 2013.
DOI 10.1523/JNEUROSCI.4428-12.2013 PMID 23447614

D. Sussman, M. van Eede, M.D. Wong, S.L. Adamson, R.M. Henkelman. Effects of a Ketogenic Diet during Pregnancy on Embryonic Growth in the Mouse. BioMed Central Pregnancy and Childbirth 13(1):109, 2013.
DOI 10.1186/1471-2393-13-109 PMID 23656724.

M.C. van Eede, J. Scholz, M.M. Chakravarty, R.M. Henkelman, J.P. Lerch. Mapping Registration Sensitivity in MR Mouse Brain Images. NeuroImage 82C:226-236, 2013.
DOI 10.1016/j.neuroimage.2013.06.004 PMID 23756204

A.L. Wheeler, J.P. Lerch, M.M. Chakravarty, M. Friedel, J.G. Sled, P.J. Fletcher, S.A. Josselyn, P.W. Frankland. Adolescent Cocaine Exposure Causes Enduring Macroscale Changes in Mouse Brain Structure. Journal of Neuroscience 33(5):1797-1803, 2013.
PMID 23365219

A.L. Wheeler, A.H. Wang, C.M. Teixeira, X. Xiong, J.P. Lerch, A.R. McIntosh, J. Parkinson, P.W. Frankland. Identification of a Functional Connectome for Long-term Fear Memory in Mice. PLoS Computational Biology 9(1):e1002853, 2013.
DOI 10.1371/journal.pcbi.1002853 PMID 23300432

M.D. Wong, J. Dazai, J.R. Walls, R.M. Henkelman. Design and Implementation of a Custom Built Optical Projection Tomographic System. PLoS One 8(9):e73491, 2013.
DOI 10.1371/journal.pone.0073491 PMID 24023880

J. Wu, YQ. Zhou, Y. Zou, R.M. Henkelman. Evaluation of Bi-ventricular Coronary Flow Patterns using High-Frequency Ultrasound in Mice with Transverse Aortic Constriction. Ultrasound in Biology and Medicine 39(11):2053-2065, 2013.
DOI 10.1016/j.nltrasmedbio.2013.04.022 PMID 23932279


2012

S.A. Bainbridge, A. Minhas, K.J. Whiteley, D. Qu, J.G. Sled, J.C.P. Kingdom, S.L. Adamson. Effects of Reduced Gcm1 Expression of Trophoblast Morphology, Feto-placental Vascularity and Pregnancy Outcomes in Mice. Hypertension 59(3):732-739, 2012.
DOI 10.1161/HYPERTENSIONAHA.111.183939 PMID 22275534

C.A. Berrios-Otero, B.J. Nieman, P. Parasoglou, D.H. Turnbull. In Utero Phenotyping of Mouse Embryonic Vasculature with MRI. Magnetic Resonance in Medicine 67(1):251-257, 2012.
DOI 10.1002/mrm.22991 PMID 21590728

L.S. Cahill, C.L. Laliberté, J. Ellegood, S. Spring, J.A. Gleave, M.C. van Eede, J.P. Lerch, R.M. Henkelman. Preparation of Fixed Mouse Brains for MRI. NeuroImage 60(2):933-939, 2012.
DOI 10.1016/j.neuroimage.2012.01.100 PMID 22305951

M.M. Chakravarty, D. Felsky, M. Tampakeras, J.P. Lerch, B. Mulsant, J. Kennedy, A. Voineskos. DISC1 and striatal volume: a potential risk phenotype for mental illness. Frontiers in Neuropsychiatric Imaging and Stimulation 3:57, 2012.
DOI 10.3389/fpsyt.2012.00057 PMID 22723785.

L.V. Chinta, L. Lindvere, A. Dorr, B. Sahota, J.G. Sled, B. Stefanovic. Quantitative Estimates of Stimulation-induced Perfusion Response using Two-photon Fluorescence Microscopy of Cortical Microvascular Networks. NeuroImage 61(3):517-524, 2012.
DOI 10.1016/j.neuroimage.2012.04.009 PMID 22521258

B.P. Chugh, J. Bishop, Y-Q. Zhou, J. Wu, R.M. Henkelman, J.G. Sled. A Robust Method for 3D Arterial Spin Labeling in Mice. Magnetic Resonance in Medicine 68(1):98-106, 2012.
DOI 10.1002/mrm.23209 PMID 22102489

J. Ellegood, R.M. Henkelman, J.P. Lerch. Magnetic Resonance Imaging as a Tool for the Study of Mouse Models of Autism. Autism S1:008, 2012. www.omicsgroup.org/journals/auohome.php
DOI 10.4172/2165-7890.S1-008

J. Ellegood, R.M. Henkelman, J.P. Lerch. Neuroanatomical Assessment of the Integrin β3 Mouse Model related to Autism and Serotonin System using High Resolution MRI. Frontiers of Psychiatry Translational Imaging Genetics 3:37, 2012.
DOI 10.3389/psyt.2012.00037 PMID 22557981

L.M. Gazdzinski, K. Cormier, F.G. Lu, J.P. Lerch, C.S. Wong, B.J. Nieman. Radiation-induced Alterations in Mouse Brain Development Characterized by MRI. International Journal of Radiation Oncology Biology Physics 84(5):e631-e638, 2012.
DOI 10.1016/j.ijrobp.2012.06.053 PMID 22975609

J.A. Gleave, M.D. Wong, J. Dazai, M. Altaf, R.M. Henkelman, J.P. Lerch, B.J. Nieman. Neuroanatomical Phentoyping of the Mouse Brain with Three-dimensional Autofluorescence Imaging. Physiological Genomics 44(15):778-785, 2012.
DOI 10.1161/physiolgenomics.00055.2012 PMID 22718750

J.P. Lerch, L. Gazdzinski, J. Germann, J.G. Sled, R.M. Henkelman, B.J. Nieman. Wanted Dead or Alive? The Tradeoff between In-Vivo versus Ex-vivo MR Brain Imaging in the Mouse. Frontiers in Neuroinformatics 6:6, 2012.
DOI 10.3389/fninf.2012.00006 PMID22470335

A. Mansouri, W. Min, C.J. Cole, S.A. Josselyn, J.T. Henderson, M. van Eede, R.M. Henkelman, C. Ackerley, E. Grunebaum, C.M. Roifman. Cerebellar Abnormalities in Purine Nucleoside Phosphorylase Deficient Mice. Neurobiology of Disease 47(2):201-209, 2012.
DOI 10.1016/j.nbd.2012.04.001 PMID 22521465

K. Marcinko, T. Parsons, J.P. Lerch, J.G. Sled, B. Sakic. Effects of Prolonged Treatment with Memantine in the MRL Model of CNS Lupus. Clinical and Experimental Neuroimmunology 3(3): 116-128, 2012.
DOI 10.1111/j.1759-1961.2012.00032.x

B.J. Nieman, M.C. Blank, B.B. Roman, R.M. Henkelman, K.J. Millen. If the Skull Fits: Magnetic Resonance Imaging and Microcomputed Tomography for Combined Analysis of Brain and Skull Phenotypes in the Mouse. Physiological Genomics44:992-1002, 2012.
DOI 10.1152/physiogenomics.00093.2012 PMID 22947655

M.Y. Rennie, J. Detmar, K.J. Whiteley, A. Jurisicova, S.L. Adamson, J.G. Sled. Expansion of the Fetoplacental Vasculature in Late Gestation is Strain Dependant in Mice. American Journal of Physiology-Heart and Circulatory Physiology 302(6):H1261-1273, 2012.
DOI 10.1152/ajpheart.00776.2011 PMID 22268107

G. Winocur, M. Henkelman, M. Wojtowicz, H. Zhang, M. Binns, I. Tannock. The Effects of Chemotherapy on Cognitive Function in a Mouse Model: A Prospective Study. Clinical Cancer Research 18(11):3112-3121, 2012.
DOI 10.1158/10788-0432.CCR-12-0060 PMID 22467680

J. Yang, H. Noyan-Ashraf, A. Meissner, J. Voiglaender-Bolz, J.T. Kroetsch, W. Foltz, D. Jaffray, A. Kapoor, A. Momen, S.P. Hexmier, H. Zhang, M. van Eede, M. Henkelman, S.G. Matthews, D. Lidington, M. Husain, S-S. Bolz. Proximal Cerebral Arteries Develop Myogenic Responsiveness in Heart Failure Via TNFα-dependent Activation of S1P Signaling. Circulation 126(2):196-206, 2012.
DOI 10.1161/CIRCULATIONAHA.111.039644 PMID 22668972

M.D. Wong, A.E. Dorr, J.R. Walls, J.P. Lerch, R.M. Henkelman. A Novel 3D Mouse Embryo Atlas Based on Micro-CT. Development 139(17):3248-3256, 2012.
DOI 10.1242/dev.082016 PMID 22872090


2011

K.G. Akers, S.A. Kushner, A.T. Leslie, L. Clarke, D. van der Kooy, J.P. Lerch, P.W. Frankland. Fetal Alcohol Exposure Leads to Abnormal Olfactory Bulb Development and Impaired Odor Discrimination in Adult Mice. Molecular Brain 4:29, 2011.
DOI 10.1186/1756-6606-4-29

L. Baghdadi, M. Zamyadi, J.G. Sled, J.E. Schneider, S. Bhattacharya, R.M. Henkelman, J.P. Lerch. Semi-Automatic Segmentation of Multiple Mouse Embryos in MR Images. BMC Bioinformatics 12(1):237, 2011.
www.biomedcentral.com/1471-2105/12/237
DOI 10.1186/1471-2105-12-237 PMID 21679425

M.C. Blank, I. Grinberg, E. Aryee, C. Laliberte, V.V. Chizhikov, R.M. Henkelman, K.J. Millen. Multiple Cerebellar Developmental Programs Are Altered by Loss of Zic1 and Zic4 to Cause Dandy-Walker Malformation Cerebellar Pathogenesis. Development 138(6):1207-1216, 2011.
DOI 10.1242/dev.054114 PMID 21307096

J.B. Carroll, J.P. Lerch, S. Franciosi, A. Spreeuw, N. Bissada, R.M. Henkelman, M.R. Hayden. Natural History of Diseases in the YAC128 Mouse Reveals a Discrete Signature of Early Pathology in HD. Neurobiology of Disease 43(1):257-265, 2011.
DOI 10.1016/j.nbd.2001.03.018 PMID 21458571

J.B. Carroll, A.L. Southwell, R.K. Graham, J.P. Lerch, D.E. Ehrnhoefer, L-P. Cao, W-N. Zhang, Y. Deng, N. Bissada, R.M. Henkelman, M.R. Hayden. Mice Lacking Caspase-2 are Protected from Behavioral Changes, But Not Pathology, in the YAC128 Model of Huntington Disease. Molecular Neurodegeneration 6:59, 2011.
DOI 10.1186/1750-1326-6-59 PMID 21854568

X.J. Chen, B.J. Nieman. Mouse phenotyping with MRI. Methods in Molecular Biology 771:595-631, 2011.
DOI 10.1007/978-1-61779-219-9_31 PMID 21874500

J. Ellegood, J.P. Lerch, R.M. Henkelman. Brain Abnormalities in a Neuroligin3 R451C Knockin Mouse Model Associated with Autism. Autism Research 4(5):368-376, 2011.
DOI 10.1002/aur.215 PMID 21882360197.

Y. Hoi, Y-Q. Zhou, X. Zhang, R.M. Henkelman, D.A. Steinman. Correlation between Local Hemodynamics and Lesion Distribution in Novel Aortic Regurgitation Murine Model of Atherosclerosis. Annals of Biomedical Engineering 39(5):1414-1422, 2011.
DOI 10.1007/s10439-011-0255-z PMID 21279441

G. Horev, J. Ellegood, J.P. Lerch, E. Son, L. Muthuswamy, H. Vogel, A.M. Krieger, A. Buja, R.M. Henkelman, M. Wigler, A.A. Mills. Dosage-dependent Phenotype in Models of 16p11.2 Lesions Found in Autism. PNAS 108(41):17076-17081, 2011.
PMID 21969575

W. Huang, Z. Zhou, S. Asrar, M. Henkelman, W. Xie, Z. Jia. p21-Activated Kinases 1 and 3 control Brain Size through Coordinating Neuronal Complexity and Synaptic Properties. Molecular and Cellular Biology 31(3):388-403, 2011.
DOI 10.1128/MCB.00969-10 PMID 21115725

M. Jeansson, A. Gawlik, G. Anderson, C. Li, D. Kerjaschki, R.M. Henkelman, S.E. Quaggin. Angiopoietin-1 is Essential in Mouse Vasculature during Development and in Response to Injury. Journal of Clinical Investigation 121(6):2278-2289, 2011.
DOI 10.1172/JCI46322 PMID 21606590

M. Jerkic, M.G. Kabir, A. Davies, L.X. Yu, B.A.S. McIntyre, N.W. Husain, M. Enomoto, V. Sotov, M. Husain, M. Henkelman, J. Belik, M. Letarte. Pulmonary Hypertension in Adult Alk1 Heterozygous Mice Due to Oxidative Stress. Cardiovascular Research 92(3):375-384, 2011.
DOI 10.1093/cvr/cvr232 PMID 21859819

J.J. Kim, P.S. Gill, L. Rotin, M. van Eede, M. Henkelman, C-C. Hui, N.D. Rosenblum. Suppressor of Fused Controls Mid-Hindbrain Patterning and Cerebellar Morphogenesis Via GL13 Repressor. Journal of Neuroscience 31(5):1825-1836, 2011.
PMID 21289193

J.P. Lerch, J.G. Sled, R.M. Henkelman. MRI Phenotyping of Genetically Altered Mice. Methods in Molecular Biology 711:349-361, 2011.
PMID 21279611

J.P. Lerch, A.P. Yiu, A. Martinez-Canabal, T. Pekar, V.D. Bohbot, P.W. Frankland, R.M. Henkelman, S.A. Josselyn, J.G. Sled. Maze Training in Mice Induces MRI Detectable Brain Shape Changes Specific to the Type of Learning. NeuroImage 54(3):2086-2095, 2011.
DOI 10.1016/j.neuroimaging.2010.09.068 PMID 20932918

P. Mohseni, H-K. Sung, A.J. Murphy, C.L. Laliberte, H-M. Pallari, R.M. Henkelman, J. Georgiou, G. Xie, S.E. Quaggin, P.S. Thorner, J.E. Eriksson, A. Nagy. Nestin is not Essential for Development of the CNS But Required for Dispersion of Acetylcholine Receptor Clusters at the Area of Neuromuscular Junctions. Journal of Neuroscience 31(32):11547-11552, 2011.
DOI 10.1523/JNEUROSCI.4396.10.2011 PMID 21832185

E.E. Mueller, A. Momen, S. Massé, Y-Q. Zhou, J. Liu, P.H. Backx, R.M. Henkelman, K. Nanthakumar, D.J. Stewart, M. Husain. Electrical Remodeling Precedes Heart Failure in an Endothelin-1-induced Model of Cardiomyopathy. Cardiovascular Research 89(3):623-633, 2011.
DOI 10.1093/cvr/cvq351 PMID 21062919

B.J. Nieman, M.D. Wong, R.M. Henkelman. Genes into Geometry: Imaging for Mouse Development. Current Opinion in Genetics and Development 21(5):638-646, 2011.
DOI 10.1016/j.gde.2011.08.008 PMID 21907568

M.Y. Rennie, J. Detmar, K. Whiteley, J. Yang, A. Jurisicova, S.L. Adamson, J.G. Sled. Vessel Tortuousity and Reduced Vascularization in the Fetoplacental Arterial Tree after Maternal Exposure to Polycyclic Aromatic Hydrocarbons. American Journal of Physiology-Heart and Circulatory Physiology 300(2):H675-H684, 2011.
DOI 10.1152/ajpheart.00510.2010 PMID 21148768.

R.R. Singaraja, K. Huang, S.S. Sanders, A. Milnerwood, R. Hines, J. Lerch, S. Franciosi, R. Drisdel, K. Vaid, F.B. Young, C. Doty, J. Wan, N. Bissada, R.M. Henkelman, W.N. Green, N.G. Davis, L.A. Raymond, M.R. Hayden. Altered Palmitoylation and Neuropathological Deficits in Mice Lacking HIP14. Human Molecular Genetics 20(20):3899-3909, 2011.
DOI 10.1093/hmg/ddr308 PMID 21775500

J.K. Takeuchi, X. Lou, J.M. Alexander, H. Sugizaki, P. Delgado-Olguin, A.K. Holloway, A.D. Mori, J.N. Wylie, C. Munson, Y. Zhu, Y.Q. Zhou, R.F. Yeh, R.M. Henkelman, R.P. Harvey, D. Metzger, P. Chambon, D.Y. Stainier, K.S. Pollard, I.C. Scott, B.G. Bruneau. Chromatin Remodeling Complex Dosage Modulates Transcription Factor Function in Heart Development. Nature Communications 2:187, 2011.
DOI 10.1038/ncomms1187(2011) PMID 2130451

A.K.Y. Tsui, P.A. Marsden, C.D. Mazer, S.L. Adamson, M. Henkelman, D. Wilson, S.P. Heximer, M. El-beheiry, N. Dattani, K. Chen, G.M.T. Hare. Priming of Hypoxia Inducible Factor by Neuronal Nitric Oxide Synthase-derived Nitric Oxide is Essential for Adaptive Responses to Severe Anemia. PNAS 108(42):17544-17549, 2011.
DOI 10.1073/pnas.1114026108 PMID 21976486

X. Yu, A. Suderov, K. U. Szulc, B. J. Nieman, D. Abdollahian, N. Bhatia, A. K. Lalwani, A. L. Joyner, D. H. Turnbull. Morphological and Functional Midbrain Phenotypes of Fgf17 Mutant Mice Revealed by Mn-enhanced MRI. NeuroImage 56(3):1251-1258, 2011.
DOI 10.1016/j.neuroimage.2011.02.068 PMID 21356319

S-S. Zhang, K-H. Kim, A. Rosen, J.W. Smyth, R. Sakuma, P. Dalgado-Olguin, M. Davis, N.C. Chi, V. Puviindran, N. Gaborit, T. Sukonnik, J.N. Wylie, K. Brand-Arzamendi, G. Farman, J. Kim, R.A. Rose, P.A. Marsden, Y. Zhu, Y-Q. Zhou, L. Miquerol, R.M. Henkelman, D.Y.R. Stainier, R.M. Shaw, C-C. Hui, B.G. Bruneau, P.H. Backx. Iroquois Homeobox Gene 3 Establishes Fast Conduction in the Cardiac His-Purkinje Network. Proceedings of the National Academy of Science USA 108(33):13576-13581, 2011.
DOI 10.1073/pnas.1106911108 PMID 21825130

2010

X.J. Chen, S. Maheswaran, D. Ruckert, R.M. Henkelman. Image Registration of Whole-body Mouse MRI. 2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 1063-1064, 2010.
DOI 10.1109/ISBI.2010.5490174

L. Coultas, E. Nieuwenhuis, G.A. Anderson, R.M. Henkelman, C-C. Hui, J. Rossant. Hedgehog Regulates Blood Vascular Development through VEGF Dependent and Independent Mechanisms. Blood 116(4):653-660, 2010.
DOI 10.1182/blood-2009-12-256644 PMID 20339091

J. Dazai, S. Spring, L.S. Cahill, R.M. Henkelman. Multiple-Mouse Neuroanatomical Magnetic Resonance Imaging (Video Article). Journal of Visualized Experiments (JoVE), 2010. http://www.jove.com/index/Details.stp?ID=2497. DOI 10.3791/2497

J. Ellegood, L.K. Pacey, D.R. Hampson, J.P. Lerch, R.M. Henkelman. Anatomical Phenotyping in a Mouse Model of Fragile X Syndrome with Magnetic Resonance Imaging. NeuroImage 53(3):1023-1029, 2010.
DOI 10.1016/j.neuromage.2010.03.038 PMID 20304074

F. Fouladkou, C. Lu, C. Jiang, L. Zhou, Y. She, J.R. Walls, H. Kawabe, N. Brose, R.M. Henkelman, A. Huang, B.G. Bruneau, D. Rotin. The Ubiguitin Ligase NEDD4-1 is Required for Heart Development and is a Suppressor of Thrombospondin-1. Journal of Biological Chemistry 285(9):6770-6780, 2010.
DOI 10.1074/jbc.M109.082347 PMID 20026598

R.M. Henkelman. Systems Biology through Mouse Imaging Centers: Experience and New Directions. Annual Review of Biomedical Engineering 12:143-166, 2010.
DOI 10.1146/annurev-bioeng-070909-105343 PMID 20415591

A. Khmelinskii, M. Baiker, X.J. Chen, J. Reiber, R.M. Henkelman, B.P.F. Lelieveldt. Atlas-based organ and bone approximation for ex-vivo µMRI mouse date: a pilot study. 2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 1197-1200, 2010.
DOI 10.1109/ISBI.2010.5490209

B.J. Nieman, J.Y. Shyu, J.J. Rodriguez, A.D. Garcia, A.L. Joyner, D.H. Turnbull. In Vivo MRI of Neural Cell Migration Dynamics in the Mouse Brain. NeuroImage 50(2):456-464, 2010.
DOI 10.1016/j.neuroimage.2009.12.107 PMID 20053381

B.J. Nieman, D.H. Turnbull. Ultrasound and Magnetic Resonance Microimaging of Mouse Development. Methods in Enzymology 476:379-400, 2010.
PMID 20691877

M. Sauvé, K. Ban, M.A. Momem, Y-Q, Zhou, R.M. Henkelman, M. Husain, D.J. Drucker. Genetic Deletion or Pharmacological Inhibition of Dipeptidyl Peptidase-4 Improves Cardiovascular Outcomes following Myocardial Infarction in Mice. Diabetes 59(4):1063-1073, 2010.
DOI 10.2337/db09-0955 PMID 20097729

S. Spring, J.P. Lerch, M.K. Wetzel, A.C. Evans, R.M. Henkelman. Cerebral Asymmetries in 12-week- old C57Bl/6J Mice Measured by Magnetic Resonance Imaging. NeuroImage 50(2):409-415, 2010.
DOI 10.1016/j.neuorimage.2009.12.043 PMID 20026229

T.J. Sproule, J.G. Sled, J. Wentzell, B. Wang, R.M. Henkelman, D.C. Roopenian, R.W. Burgess. A Mouse Model of Heritable Cerebrovascular Disease. PLoS One 5(12):e15327, 2010.
DOI 10.1371/journal.pone.0015327 PMID 21217823

M. Toporsian, M. Jerkic, Y-Q. Zhou, M.G. Kabir, L.X. Yu, B.A. McIntyre, A. Davis, Y.J. Wang, D.J. Stewart, J. Belik, M. Husain, M. Henkelman, M. Letarte. Spontaneous Adult-onset Pulmonary Arterial Hypertension Attributable to Increase Endothelial Oxidative Stress in a Murine Model of Hereditary Hemorrhagic Telangiectasia. Artrosclerosis, Thrombosis and Vascular Biology 30(3):509-517, 2010.
DOI 10.1161/ATVBAHA.109.200121 PMID 20042709

K. Xu, E. Nieuwenhuis, B. Cohen, W. Wang, A.J. Canty, J. Danska, L. Coultas, J. Rossant, M.Y. Wu, T.D. Piscione, A. Nagy, A. Gossler, G.G. Hicks, C-C. Hui, R.M. Henkelman, L.X. Yu, J.G. Sled, T. Gridley, S.E. Egan. Lunatic Fringe-mediated Notch Signaling is Required for Lung Alveogenesis. American Journal of Physiology: Lung Cellular and Molecular Physiology 298(1):L45-L56, 2010.
DOI 10.1152/ajplung.90550.2008 PMID 19897741

J. Yang, L.X. Yu, M.Y. Rennie, J.G. Sled, R.M. Henkelman. Comparative Structural and Hemodynamic Analysis of Vascular Trees. American Journal of Physiology-Heart and Circulatory Physiology 298:H1249-H1259, 2010.
DOI 10.1152/ajpheart.00363.2009 PMID 20081111

T. Yu, Z. Li, Z. Jia, S.J. Clapcote, C. Liu, S. Li, S. Asrar, A. Pao, R. Chen, N. Fan, S. Carattini-Rivera, A.R. Bechard, S. Spring, R.M. Henkelman, G. Stocia, S. Matsui, N.J. Nowak, J.C. Roder, C. Chen, A. Bradley, Y.E. Yu. A Mouse Model of Down Syndrome Trisomic for All Human Chromosome 21 Syntenic Regions. Human Molecular Genetics 19(14):2780-2791, 2010.
PMID 20442137

M. Zamyadi, L. Baghdadi, J. Lerch, S. Bhattacharya, J. Schneider, R.M. Henkelman, J.G. Sled. Mouse Embryonic Phenotyping by Morphometric Analysis of MR Imaging. Physiological Genomics 42A:89-95, 2010.
DOI 10.1152/physiolgenomics.00091.2010 PMID 20682847

X. Zhang, J.E. Schneider, S. Portnoy, S. Bhattacharya, R.M. Henkelman. Comparative SNR for High Throughput Mouse Embryo MR Microscopy. Magnetic Resonance in Medicine 63(6):1703-1707, 2010.
DOI 10.1002/mrm.22352 PMID 20512875

Y-Q. Zhou, S-N. Zhu, F.S. Foster, M.I. Cybulsky, R.M. Henkelman. Aortic Regurgitation Dramatically Alters the Distribution of Atherosclerotic Lesions and Enhances Atherogenesis in Mice. Atherosclerosis, Thrombosis and Vascular Biology 30:1181-1188, 2010.
DOI 10.1161/ATVBAHA.100.204198 PMID 2029968

2009

J. Belik, M. Jerkic, B.A. McIntyre, J. Pan, J. Leen, L. Yu, R.M. Henkelman, M. Toporsian, M. Letarte. Age-Dependent Endothelial Nitric Oxide Synthase Uncoupling in Pulmonary Arteries of Endoglin Heterozygous Mice. American Journal of Physiology: Lung Cellular and Molecular Physiology 297(6):L1170-L1178, 2009.
DOI 10.1152/ajplung.00168.2009 PMID 19820034

C.A. Berrios-Otero, Y.Z. Wadghiri B.J. Nieman, A.L. Joyner, D.H. Turnbull. Three-dimensional Micro-MRI Analysis of Cerebral Artery Development in Mouse Embryos. Magnetic Resonance in Medicine 62:1431-1439, 2009.
DOI 10.1002/mrm.22113 PMID 19859945

B.P. Chugh, J.P. Lerch, L.X. Yu, M. Pienkowski, R.V. Harrison, R.M. Henkelman, J.G. Sled. Measurement of Cerebral Blood Volume in Mouse Brain Regions Using Micro-Computed Tomography. NeuroImage 47:1312-1318, 2009.
DOI 10.1016/j.neuroimage.2009.03.083 PMID 19362597

S.J. Clapcote, S. Duffy, G. Xie, G. Kirshenbaum, A.R. Bechard, V.R., Schack, J. Petersen, L. Sinai, B.J. Saab, J.P. Lerch, B.A. Minassian, C.A. Ackerley, J.G. Sled, M.A. Cortez, J.T. Henderson, B. Vilsen, J.C. Roder. Mutation 1810N in the {alpha} 3 Isoform of Na+,K+-ATPase Causes Impairments in the Sodium Pump and Hyperexcitability in the CNS. Proceedings of the National Academy of Science 106:14085-14090, 2009.
DOI 10.1073/pnas.0904817106 PMID 19666602

S.K. Ho, N. Kovacevic, R.M. Henkelman, A. Boyd, T. Pawson, J.T. Henderson. EphB2 and EphA4 Receptors Regulate Formation of the Principle Inter-hemispheric Tracts of the Mammalian Forebrain. Neuroscience 160(4):784-795, 2009.
DOI 10.1016/j.neuroscience.2009.03.013 PMID 19289155

O. Kaidanovich-Beilin, T.V. Lipina, K. Takao, M. van Eede, S. Hattori, C. Laliberté, M. Khan, K. Okamoto, J.W. Chambers, P.J. Fletcher, K. MacAulay, B.W. Doble, M. Henkelman, T. Miyakawa, J. Roder, J.R. Woodgett. Abnormalities in Brain Structure and Behavior in GSK-3 Mutant Mice. Molecular Brain 2:35, 2009.
DOI 10.1186/1756-6606-2-35 PMID 19925672

S.C. Kale, X.J. Chen, R.M. Henkelman. Trading Off SNR and Resolution in MRI Images. NMR in Biomedicine 22:488-494, 2009.
DOI 10.1002/nbm.1359 PMID 19123210

K. Koshiba-Takeuchi, A.D. Mori, B.L. Kaynak, J. Cebra-Thomas, T. Sukonnik, R.O. Georges, S. Latham, L. Beck, R.M. Henkelman, B.L. Black, E.N. Olson, J. Wade, J.K. Takeuchi, M. Nemer, S.F. Gilbert, B.G. Bruneau. Reptilian Heart Development and the Molecular Basis of Cardiac Chamber Evolution. Nature 461, 3 September 2009.
DOI 10.38/nature.08324 PMID 19727199

M. Marxen, J.G. Sled, R.M. Henkelman. Volume Ordering for Analysis and Modeling of Vascular Systems. Annals of Biomedical Engineering 37(3):542-551, 2009.
DOI 10.1007/s10439-008-9623-8 PMID 19107598

R.E. Mercer, E.M. Kwolek, J.M. Bischof, M. van Eede, R.M. Henkelman, R. Wevrick. Regionally Reduced Brain Volume, Altered Serotonin Neurochemistry, and Abnormal Behavior in Mice Null for the Circadian Rhythm Output Gene Magel2. American Journal of Medical Genetics B Neuropsychiatry Genetics 150B:1085-1099, 2009.
DOI 10.1002/ajmg.b.30934 PMID 19199291

B.J. Nieman, K.U. Szulc, D.H. Turnbull. Three-dimensional, in vivo MRI with Self-gating and Image Coregistration in the Mouse. Magnetic Resonance in Medicine 61(5):1148-1157, 2009.
DOI 10.1002/mrm.21945 PMID 19253389

M.H. Noyan-Ashraf, M.A. Momen, K. Ban, A.M. Sadi, Y.Q. Zhou, A.M. Riazi, L.L. Baggio, R.M. Henkelman, M. Husain, D.J. Drucker. The GLP-1R Agonist Liraglutide Activates Cytoprotective Pathways and Improves Outcomes Following Experimental Myocardial Infarction in Mice. Diabetes 58(4):975-983, 2009.
DOI 10.2337/db08-1193 PMID 19161200

S. Portnoy, S.C. Kale, A. Feintuch, C. Tardif, G.B. Pike, R.M. Henkelman. Information Content of SNR/Resolution Tradeoffs in Three Dimensional Magnetic Resonance Imaging. Medical Physics 36(4):1442-1451, 2009.
DOI 10.1118/1.3098124 PMID 19472651

J.G. Sled, S. Spring, M. van Eede, J.P. Lerch, S. Ullal, B. Sakic. The Time Course and Nature of Brain Atrophy in the MRL Model of CNS Lupus. Arthritis and Rheumatism 60(6):1764-1774, 2009.
DOI 10.002/art.24523 PMID 19479832

S. Stapleton, H. Goodman, Y-Q. Zhou, E. Cherin, R.M. Henkelman, P.N. Burns, F.S. Foster. Acoustic and Kinetic Behaviour of Definity in Mice Exposed to High Frequency Ultrasound. Ultrasound in Medicine and Biology 35(2):296-307, 2009.
DOI 10.1016/j.ultrasmedbio.2008.08.010 PMID 18950930

2008

J. Detmar, M.Y. Rennie, K.J. Whiteley, D. Qu, Y. Taniuchi, X., Shang, R.F. Casper, S.L Adamson, J.G. Sled, A. Jurisicova. Fetal Growth Restriction Triggered by Polycyclic Aromatic Hydrocarbons is Associated with Altered Placental Vasculature and AhR-dependent Changes in Cell Death. American Journal of Physiology Endocrinology and Metabolism 295:E519-E530, 2008.
DOI 10.1152/ajpendo.90436.2008

A.E. Dorr, J.P. Lerch, S. Spring, N. Kabani, R.M. Henkelman. High Resolution Three Dimensional Brain Atlas using an Average Magnetic Resonance Imaging of 40 Adult C57BL/6J Mice. NeuroImage. 42(1):60-69, 2008.
DOI 10.1016/j.neuroimage.2008.03.037

S. Grabherr, M. Dominietto, L. Yu, V. Djonov, B. Müller, S. Friess. Angiofil: a novel radio-contrast agent for post-mortem micro-angiography. In: Developments in X-Ray Tomography VI. Edited by Stuart R. Stock. Proceedings of SPIE 7078: 70781O, 2008.
DOI 10.1117/12.792077

S.C. Kale, J.P. Lerch, R.M. Henkelman, X.J. Chen. Optimization of the SNR-Resolution Tradeoff for Registration in Magnetic Resonance Images. Human Brain Mapping 29:1147-1158, 2008.
DOI 10.1002/hbm.20453

J.C. Lau, J.P. Lerch, J.G. Sled, R.M. Henkelman, A.C. Evans, B.J. Bedell. Longitudinal Neuroanatomical Changes Determined by Deformation-Based Morphometry in Mouse Models of Alzheimer’s Disease. NeuroImage 42:19-67, 2008.
DOI 10.1016/j.neuroimage.2008.04.252

J.P. Lerch, J.B. Carroll, S. Spring, L.N. Bertram, C. Schwab, M.R. Hayden, R.M. Henkelman. Automated Deformation Analysis in the YAC128 Huntington Disease Mouse Model. NeuroImage 39(1):32-39, 2008.
DOI 10.1016/j.neuroimage.2007.08.033

J.P. Lerch, J.B. Carrol, A. Dorr, S. Spring, M. Hayden, J.G. Sled, R.M. Henkelman. Cortical Thickness Measured from MRI in the YAC128 Mouse Model of Huntington’s Disease. NeuroImage. 41(2):243-251, 2008 (Cover Illustration).
DOI 10.1016/j.neuroimage.2008.02.019

T.V. Lipina, S.J. Clapcote, K. Millar, Y. Gondo, R.M. Henkelman, D.J. Porteous, J.C. Roder. Impaired function of phosphodiesterase 4B mutated disc 1 mice leads to development of pronounced depression-like behavior with mild expression of schizophrenia-like phenotype. In: Behavioral Models of Stress Research. Edited by A.V. Kalueff and J.L. LaPorte. New York: Nova Biomedical Books, 2008.

J.R. Walls, L. Coultas, J. Rossant, R.M. Henkelman. Three-Dimensional Analysis of Vascular Development in the Mouse Embryo. PLoS-ONE 3(8):e2853, 2008.
DOI 10.1371/journal.pone.0002853.

K.N. Watt, J. Bishop, B.J. Nieman, R.M. Henkelman, X.J. Chen. Oxygen-enhanced MR Imaging of Mice Lungs. Magnetic Resonance in Medicine 59(6):1412-1421, 2008.
DOI 10.1002/mrm.21517

M.K. Wetzel, S. Naska, C.L. Laliberte, V.V. Rymar, M. Fujitani, J.A. Biernaskie, C.J. Cole, J.P. Lerch, S. Spring, S-H. Wang, P.W. Frankland, R.M. Henkelman, S.A. Josselyn, A.F. Sadikot, F.D. Miller, D.R. Kaplan. p73 Regulates Neurodegeneration and Phospho-Tau Accumulation During Aging and Alzheimer’s Disease. Neuron 59:708-721, 2008.
DOI 10.1016/j.neuron.2008.07.021

Y. Zhu, A.O. Gramolini, M.A. Walsh, Y-Q. Zhou, C. Slorach, M. Freidberg, J.K. Takeuchi, H. Sun, R.M. Henkelman, P.H. Backx, A.N. Redington, D.H. MacLennan, B.G. Bruneau. Tbx5-Dependent Pathway Regulating Diastolic Function in Congenital Heart Disease. PNAS 105(14):5519-5524, 2008.
DOI 10.1073/pnas.0801779105 PMID 18378906

2007

M. Allard, D. Côté, L. Davidson, J. Dazai, R.M. Henkelman. Bioluminescence Tomography in Mice: Impact of Anatomy on the Forward Problem. J. Biol. Optics 12:034018, 2007 (Cover Illustration).
DOI 10.1117/1.2745298

E. Chan, N. Kovacevic, S. Ho, R.M. Henkelman, J.T. Henderson. Development of a High Resolution Three-Dimensional Surgical Atlas of the Murine Head for Strains 129S1/SvImJ and C57B1/6J Mice using Magnetic Resonance Imaging and Micro-Computed Tomography. Neuroscience 144:604-615, 2007.
DOI 10.1016/j.neuroscience.2006.08.080

S.J. Clapcote, T.V. Lipina, J.K. Millar, S. Mackie, S. Christie, F. Ogawa, J.P. Lerch, K. Trimble, M. Uchiyama, Y. Sakuraba, H. Kaneda, T. Shiroishi, M.D. Houslay, R.M. Henkelman, J.G. Sled, Y. Gondo, D.J. Porteous. Behavioral Phenotypes of Disc1 Missense Mutations in Mice. Neuron 54:387-402, 2007.
DOI 10.1016/j.neuron.2007.04.015

A. Dorr, J.G. Sled, N. Kabani. Three Dimensional Cerebral Vasculature of the CBA Mouse Brain: A Magnetic Resonance Imaging and Micro Computed Tomography Study. NeuroImage 35:1409-1423, 2007.
DOI 10.1016/j.neuroimage.2006.12.040

A. Feintuch, P. Ruengsakulrach, A. Lin, J. Zhang, Y-Q. Zhou, J. Bishop, L. Davidson, D. Courtmann, S. Foster, M. Henkelman, C.R. Ethier. Hemodynamics in the Mouse Aortic Arch as Assessed by MRI, Ultrasound and Numerical Modeling. American Journal of Physiology Heart and Circulatory Physiology 292:H884-H892, 2007.
DOI 10.1152/ajpheart.00796.2006

A. Feintuch, Y. Zhou, J. Bishop, L. Davidson, B.G. Bruneau, R.M. Henkelman. 4D Cardiac MRI in the Mouse. NMR in Biomedicine 20:360-365, 2007.
DOI 10.1002/nbm.1164

B.J. Nieman, J. Bishop, J. Dazai, N.A. Bock, J.P. Lerch, A. Feintuch, X.J. Chen, J.G. Sled, R.M. Henkelman. NMR Technology for Biological Studies in Mice. NMR in Biomedicine 20:291-303, 2007.
DOI 10.1002/nbm.1142

B.J. Nieman, J.P. Lerch, N.A. Bock, X.J. Chen, J.G. Sled, R.M. Henkelman. Mouse Behavioral Mutants Have Neuroimaging Abnormalities. Human Brain Mapping 28(6):567-575, 2007.
DOI 10.1002/hbm.20408

M.Y. Rennie, K.J. Whiteley, S. Kulandavelu, S.L. Adamson, J.G. Sled. 3D Visualisation and Quantification by Microcomputed Tomography of Last Gestational Changes in the Arterial and Venous Feto-placental Vasculature of the Mouse. Placenta 28:833-840, 2007.
DOI 10.1016/j.placenta.2006.12.005

S. Spring, J. Lerch, R.M. Henkelman. Sexual Dimorphism Revealed in the Structure of the Mouse Brain using Three-Dimensional Magnetic Resonance Imaging. NeuroImage 35:1424-1433, 2007.
DOI 10.1016/j.neuroscience.2007.02.023

J.R. Walls, J.G. Sled, J. Sharpe, R.M. Henkelman. Resolution Improvement in Emission Optical Projection Tomography. Physics in Medicine and Biology 52:2775-2790, 2007.
DOI 10.1088/0031-9155/52/10/010

R. Williams, A. Needles, E. Cherin, Y-Q. Zhou, R.M. Henkelman, S.L. Adamson, F.S. Foster. Noninvasive Ultrasonic Measurement of Local Pulse-Wave Velocity in Mice. Ultrasound in Medicine and Biology 33(9):1368-1375, 2007.
DOI 10.1016/j.ultrasmedbio.2007.03.012

G. Xie, S. Clapcote, B. Nieman, T. Tallerico, Y. Huang, I. Vukobradovic, S. Cordes, L. Osborne, J. Rossant, J.G. Sled, J. Henderson, J.C. Roder. Forward Genetics Screen of Mouse Reveals Dominant Missense Mutation in the P/Q-type VDCC. Genes, Brain and Behavior 6(8):717-727, 2007.
DOI 10.1111/j.1601-183X.2007.00302x PMID 17376154

Y-Q. Zhou, R. Bishay, A. Feintuch, K Tao, F. Golding, W. Zhu, L.J. West, R.M. Henkelman. Morphological and Functional Observations of Murine Heterotypic Cardiac Isografts using Ultrasound Biomicroscopy. Ultrasound in Medicine and Biology 33(6):870-879, 2007.
DOI 10.1016/j.ultrasmedbio.2006.10.016

2006

J. Bishop, A. Feintuch, J. Dazai, L. Davidson, R.M. Henkelman. Retrospective Gating for Mouse Cardiac MRI. Magnetic Resonance in Medicine 55:472-477, 2006.
DOI 10.1002/mrm.20794

N.A. Bock, N. Kovacevic, T.V. Lipina, J.C. Roder, S.L. Ackerman, R.M. Henkelman. InVivo Magnetic Resonance Imaging and Semi-Automated Image Analysis Extend the Brain Phenotype for cdf/cdf Mice. Journal of Neuroscience 26:4455-4459, 2006 (Cover Illustration).
DOI 10.1523/JNEUROSCI.5438-05.2006

X.J. Chen, R.M. Henkelman. Rapid phenotyping of mice with MRI. In: In Vivo MR Techniques in Drug Discovery and Development. Ed. Nicolau Beckmann, pp. 75-92. Boca Raton, FL: CRC Press/Taylor & Francis Group, 2006.

X.J. Chen, N. Kovacevic, N.J. Lobaugh, J.G. Sled, R.M. Henkelman, J.T. Henderson. Neuroanatomical Differences between Mouse Strains as Shown by High-Resolution 3D MRI. NeuroImage 29(1):99-105, 2006 (Cover Illustration).
DOI 10.1016/j.neuroimage.2005.07.008

R.M. Henkelman, L. Baghdadi, J.G. Sled. Presentation of 3D Isotropic Imaging Data for Optimal Viewing. Magnetic Resonance in Medicine 56(6):1371-1374, 2006.
DOI 10.1002/mrm.21077

S. Kulandavelu, D. Qu, N. Sunn, J. Mu, M.Y. Rennie, K.J. Whiteley, J.R. Walls, N.A. Bock, J.C.H. Sun, A. Covelli, J.G. Sled, S.L. Adamson. Embryonic and Neonatal Phenotyping of Genetically Engineered Mice. ILAR Journal 47(2):103-117, 2006.
PMID 16547367

H. Lu, P.W.M. Fedak, X. Dai, C. Du, Y-Q, Zhou, M. Henkelman, P.S. Mongroo, A. Lau, H. Yamabi, A. Hinek, M. Husain, G. Hannigan, J.G. Coles. Integrin-Linked Kinase Expression is Elevated in Human Cardiac Hypertrophy and Induced Hypertrophy in Transgenic Mice. Circulation 114:2271-2279, 2006.
DOI 10.1161/CIRCULATIONAHA.106.642330

M. Marxen, C. Paget, L.X. Yu, R.M. Henkelman. Estimating Perfusion using MicroCT to Locate Microspheres. Physiology in Medicine and Biology 51:N9-N16, 2006.
DOI 10.1088/0031-9155/51/1/N02

M. Marxen, J.G. Sled, L.X. Yu, C. Paget, R.M. Henkelman. Comparing Microsphere Deposition and Flow Modeling in 3D Vascular Trees. American Journal of Physiology Heart and Circulatory Physiology 291(5):H2136-H2141, 2006.
DOI 10.1152/ajpheart.00146.2006

A.D. Mori, Y. Zhu, I. Vahora, B. Nieman, K. Koshiba-Takeuchi, L. Davidson, A. Pizard, C.E. Seidman, X.J. Chen, R.M. Henkelman, B.G. Bruneau. Tbx5-Dependent Rheostatic Control of Cardiac Gene Expression and Morphogenesis. Developmental Biology 297:566-586, 2006.
DOI 10.1016/j.ydbio.2006.05.023

B.J. Nieman, A.M. Flenniken, S.L. Adamson, R.M. Henkelman, J.G. Sled. Anatomical Phenotyping in the Brain and Skull of Mutant Mice by Magnetic Resonance Imaging and Computed Tomography. Physiological Genomics 24:154-162, 2006 (Cover Illustration).
DOI 10.1152/physiolgenomics.00217.2005

Q. Wei, L. Clarke, D.K. Scheidenhelm, B. Qian, A. Tang, N. Sabha, Z. Karim, N.A. Bock, R. Reti, R. Swoboda, E. Purev, J-F. Lavoie, M.L. Bajenaru, P. Shannon, D. Herlyn, D. Kaplan, R.M. Henkelman, D.H. Gutmann, A. Guha. High-Grade Glioma Formation Results from Postnatal Pten Loss or Mutant Epidermal Growth Factor Receptor Expression in a Transgenic Mouse Glioma Model. Cancer Research 66:7429-7437, 2006.
DOI 10.1158/0008-5472CAN-0600712

2005

R. Behin, J. Bishop, R.M. Henkelman. Dynamic Range Requirements for MRI. Concepts of Magnetic Resonance, Part B: Magnetic Resonance Engineering 26B(1):28-35, 2005.
DOI 10.1002/cmr.b.20042

N.A. Bock, B.J. Nieman, J.B. Bishop, R.M. Henkelman. In Vivo Multiple-Mouse MRI at 7 Tesla. Magnetic Resonance in Medicine 54(5):1311-1316, 2005.
DOI 10.1002/mrm.20683

X.J. Chen. Mouse morphological phenotyping with MRI. In: Magnetic Resonance Imaging: Methods and Biological Applications. Ed. Pottumarthi V. Prasad. Totowa NJ: Humana Press, 2005.

A.M. Flenniken, L.R. Osborne, N. Anderson, N. Ciliberti, C. Fleming, J.E.I. Gittens, X-Q. Gong, L.B. Kelsey, C. Lounsbury, L. Moreno, B.J. Nieman, K. Paterson, D. Qu, W. Roscoe, Q. Shao, D. Tong, G.I.L. Veitch, I. Voronina, I. Vukobradovic, G.A. Wood, Y. Zhu, R.A. Zirngibl, J.E. Aubin, D. Bai, B.G. Bruneau, M. Grynpas, J.E. Henderson, R.M. Henkelman, C. McKerlie, J.G. Sled, W.L. Stanford, D.W. Laird, G.M. Kidder, S.L. Adamson, J. Rossant. A Gja1 Missense Mutation in a Mouse Model of Oculodentodigital Dysplasia (ODDD). Development 132(19):4375-4386, 2005.
PMID 16155213

R.M. Henkelman, X.J. Chen, J.G. Sled. Disease phenotyping: structural and functional readouts. In: Imaging in Drug Discovery and Early Clinical Trails. Ed. Marcus Rudin, pp153-184. Berlin: Birkhäuser Verlag, 2005.

N. Kovacevic, J.T. Henderson, E. Chan, N. Lifshitz, J. Bishop, A.C. Evans, R.M. Henkelman, X.J. Chen. A 3D Atlas of the Mouse Brain with Estimates of the Average and Variability. Cerebral Cortex 15(5):639-645, 2005.
DOI 10.1093/cercor/bhh165

B.J. Nieman, J. Bishop, R.M. Henkelman. Gradient Hysteresis in MRI and NMR Experiments. Journal of Magnetic Resonance 177(2):336-340, 2005.
DOI 10.1016/j.jmr.2005.08.012

B.J. Nieman, N.A. Bock, J. Bishop, X.J. Chen, J.G. Sled, J. Rossant, R.M. Henkelman. Magnetic Resonance Imaging for Detection and Analysis of Mouse Phenotypes. NMR in Biomedicine 18(7):447-468, 2005.
DOI 10.1002nbm.981

B.J. Nieman, N.A. Bock, J. Bishop, J.G. Sled, X.J. Chen, R.M. Henkelman. Fast Spin-Echo for Multiple Mouse MR Phenotyping. Magnetic Resonance in Medicine 54:532-537, 2005.
DOI 10.1002/mrm.20590

J.K. Takeuchi, M. Mileikovskaia, K. Koshiba-Takeuchi, A.B. Heidt, A.D. Mori, E.P. Arruda, M. Gertsenstein, R. Georges, L. Davidson, R. Mo, C-C. Hui, R.M. Henkelman, M. Nemer, B.L. Black, A. Nagy, B.G. Bruneau. Tbx20 Dose-Dependently Regulates Transcription Factor Networks Required for Mouse Heart and Motor Neuron Development. Development 132(10):2463-2474, 2005.
PMID 18378906

J.R. Walls, J.G. Sled, J. Sharpe, R.M. Henkelman. Correction of Artefacts in Optical Projection Tomography. Physics in Medicine and Biology 50(19):4645-4665, 2005.
DOI 10.1088/0031-551/50/19/015

R. Williams, A. Needles E, Cherin, Foster FS, Zhou YQ, Henkelman M. A Retrospective Method for Pulse-wave Velocity Measurement in the Mouse. 2005 IEEE Ultrasonics Symposium. Vol. 1, pp. 381-384, 2005.
DOI 10.1109/ULTSYM.2005.1602874

Y-Q. Zhou, Y. Zhu, J. Bishop, L. Davidson, R.M. Henkelman, B.G. Bruneau, F.S. Foster. Abnormal Cardiac Inflow Patterns during Postnatal Development in a Mouse Model of Holt-Oram Syndrome. American Journal of Physiology Heart Circulation and Physiology 289(3):H992-H1001, 2005.
DOI 10.1152/ajphear.00027.2005

2004

C. Akirav, Y. Lu, J. Mu, D.W. Qu, Y.Q. Zhou, J. Slevin, D. Holmyard, F.S. Foster, S.L. Adamson. Ultrasonic Detection and Developmental Changes in Calcification of the Placenta During Normal Pregnancy in Mice. Placenta 26(2-3):129-137, 2004.
DOI 10.1016/j.placenta.2004.05.010

J. Dazai, N.A. Bock, B.J. Nieman, L.M. Davidson, R.M. Henkelman, X.J. Chen. Multiple Mouse Biological Loading and Monitoring System for MRI. Magnetic Resonance in Medicine 52(4):709, 2004.
DOI 10.1002/mrm.20215

N. Kovacevic, J. Chen, J.G. Sled, J. Henderson, M. Henkelman. Deformation Based Representation of Groupwise Average and Variability. Medical Imaging Computing and Computer-Assisted Intervention. Lecture Notes in Computer Science 3217:615-622, 2004.
DOI 10.1007/b100265

H. Lickert, J.K. Takeuchi, I. von Both, J.R. Walls, F. McAuliffe, S.L. Adamson, R.M. Henkelman, J.L. Wrana, J. Rossant, B.G. Bruneau. Baf60c Is Essential for Function of BAF Chromatin Remodeling Complexes in Heart Development. Nature 432(7013):107-112, 2004.
DOI 10.1038/nature.03071

M. Marxen, M.M. Thornton, C.B. Chiarot, G. Klement, J. Koprivnikar, J.G. Sled, R.M. Henkelman. MicroCT Scanner Performance and Considerations for Vascular Specimen Imaging. Medical Physics 31(2):305-313, 2004.
DOI 10.1118/1.163791

S.K. Singh, C. Hawkins, I.D. Clarke, J.A. Squire, J. Bayani, T. Hide, R.M. Henkelman, M.D. Cusimano, P.B. Dirks. Identification of Human Brain Tumour Initiating Cells. Nature 432(7015):396-401, 2004.
DOI 10.1031/nature03031

J.G. Sled, M. Marxen, R.M. Henkelman. Analysis of micro-vasculature in whole kidney specimens using micro-CT. 40 th Annual Meeting of the SPIE, International Symposium on Optical Science and Technology. In: Proceedings of the SPIE 5535:53-64, 2004.
DOI 10.1117/12.559731

I. von Both, C. Silvestri, T. Erdemir, H. Lickert, J.R. Walls, R.M. Henkelman, J. Rossant, R.P. Harvey, L. Attisano, J.L. Wrana. Foxh1 Is Essential for Development of the Anterior Heart Field. Developmental Cell 7(3):331-345, 2004.
PMID 17568773

N.L. Ward, A.L. Haninec, P. Van Slyke, J.G. Sled, C. Sturk, R.M. Henkelman, I.R. Wanless, D.J. Dumont. Angiopoietin-1 Causes Reversible Degradation of the Portal Microcirculation in Mice: Implications for Treatment of Liver Disease. American Journal of Pathology 165(3):889-899, 2004.
PMID 15331413

Y-Q. Zhou, L. Davidson, R.M. Henkelman, B.J. Nieman, F.S. Foster, L.X. Yu, X.J. Chen. Ultrasound-Guided Left Ventricular Catheterization: A Novel Method of Whole Mouse Perfusion for Microimaging. Laboratory Investigation 84(3):385-389, 2004.
DOI 10.1038/labinvest.3700038

Y-Q Zhou, F.S. Foster, B.J. Nieman, L. Davidson, X.J. Chen, R.M. Henkelman. Comprehensive Transthoracic Cardiac Imaging in Mice using Ultrasound Biomicroscopy with Anatomical Confirmation by Magnetic Resonance Imaging. Physiological Genomics 18(2):232-244, 2004.
DOI 10.1152/physiologicalgenomics.00026.2004

2003

N.A. Bock, N.B. Konyer, R.M. Henkelman. Multiple-Mouse MRI. Magnetic Resonance in Medicine 49(1):158-167, 2003.
DOI 10.1002/mrm.10326

N.A. Bock, G. Zadeh, L.M. Davidson B. Qian, J.G. Sled, R.M. Henkelman, A. Guha. High-Resolution Longitudinal Screening with Magnetic Resonance Imaging in a Murine Brain Cancer Model. Neoplasia 5(6):546-554, 2003.
PMCID PMC1502570

G. Hamarneh, J. Chen, B. Neiman, J. Henderson, M. Henkelman. Segmentation, Registration, and Deformation Analysis of 3D MR Images of Mice. Medical Imaging Computing and Computer-Assisted Intervention. Lecture Notes in Computer Science 2879:878-885, 2003.
DOI 10.1007/b93811

R. Karshafian, P.N. Burns, R.M. Henkelman. Transit Time Kinetics in Ordered and Disordered Vascular Trees. Physiology in Medicine and Biology 48:3225-3237, 2003.
DOI 10.1088/003-9155/48/19/009

N. Kovacevic, G. Hamarneh, M. Henkelman. Anatomically Guided Registration of Whole Body Mouse MR Images. Medical Imaging Computer and Computer-Assisted Intervention. Lecture Notes in Computer Science 2879:870-877, 2003.
DOI 10.1007/b93811

M. Marxen, R.M. Henkelman. Branching Tree Model with Fractal Vascular Resistance Explains Fractal Perfusion Heterogeneity. American Journal of Physiology Heart Circulation and Physiology 284:H1848-H1857, 2003.
DOI 10.1152/ajpheart.00510.2002

W.R. van Furth, S. Laughlin, M.D. Taylor, B. Salhia, T. Mainprize, M. Henkelman, M.D. Cusimano, C. Ackerley, J.T. Rutka. Imaging of Murine Brain Tumors using a 1.5 Tesla Clinical MRI System. Canadian Journal of Neurological Science 30:326-332, 2003.
PMID 14672264

Y.Q. Zhou, F.S. Foster, R. Parkes, S.L. Adamson. Developmental Changes in Left and Right Ventricular Diastolic Filling Patterns in Mice. American Journal of Physiology Heart Circulation and Physiology 285(4):H1563-1575, 2003.
DOI 10.1152/ajpheart.00384.2003

2002

Y.Q. Zhou, F.S. Foster, D.W. Qu, M. Zhang, K.A. Harasiewicz, S.L. Adamson. Applications for Multifrequency Ultrasound Biomicroscopy in Mice from Implantation to Adulthood. Physiological Genomics 10(2):113-126, 2002.
DOI 10.1152/physiolgenomics.00119.2001

F.S. Foster, M.Y. Zhang, Y.Q. Zhou, G. Liu, J. Mehi, E. Cherin, K.A. Harasiewicz, B.G. Starkoski, L. Zan, D.A. Knapik, S.L. Adamson. A New Ultrasound Instrument for In Vivo Microimaging of Mice. Ultrasound in Medicine and Biology 28(9):1165-1172, 2002.
DOI 10.1016/S0301-5629(02)00567-7

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